STRIDE-DB

Repeat Length	AFR	AMR	EUR	EAS	SAS	Repeat
6.0	1	0	0	0	0	CGGCGGCGGCAGCGGCGG
15.0	466	139	319	220	451	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGGCCGCGG
10.0	0	0	2	0	3	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGG
11.0	1	0	1	0	1	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGG
13.0	3	0	0	0	0	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGG
14.0	11	1	6	4	5	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGGCCG
14.7	1	0	0	0	0	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGGCCGCG
15.3	1	0	0	0	0	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGGCCGCGGC
17.0	2	0	0	0	0	CGGCGGCGGCAGCGGCGGCGGCGGCTGCGGCGGCGGCGGCCGCGGCGGCGG

Position	Disease/Trait	P-value	SNPs	Location with respect to STR	distance	Study
13:100601327	Heel bone mineral density,	1.0E-19	rs7324365	downstream	-36377	An atlas of genetic influences on osteoporosis in humans and mice.
13:100603259	Heel bone mineral density,	3.0E-21	rs9557349	downstream	-34445	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.
13:100608335	Heel bone mineral density,	2.0E-20	rs892254	downstream	-29369	Identification of 613 new loci associated with heel bone mineral density and a polygenic risk score for bone mineral density, osteoporosis and fracture.
13:100638392	Orofacial clefts,	1.0E-6	rs13542	upstream	688	Genome-wide meta-analyses of nonsyndromic cleft lip with or without cleft palate identify six new risk loci.
13:100648099	Hyperopia,	7.0E-6	rs1347190	upstream	10395	Genome-wide meta-analysis of myopia and hyperopia provides evidence for replication of 11 loci.
13:100648356	Smoking initiation (ever regular vs never regular),	2.0E-14	rs1108130	upstream	10652	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.
13:100648356	Educational attainment,	6.0E-13	rs1108130	upstream	10652	Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals.
13:100649197	Hyperopia,	7.0E-6	rs17474781	upstream	11493	Evaluation of Shared Genetic Susceptibility to High and Low Myopia and Hyperopia.
13:100671869	Waist-hip ratio,	4.0E-9	rs7323466	upstream	34165	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.
13:100671869	Waist-to-hip ratio adjusted for BMI,	6.0E-9	rs7323466	upstream	34165	Shared Genetic and Experimental Links between Obesity-Related Traits and Asthma Subtypes in UK Biobank.
13:100671869	Appendicular lean mass,	6.0E-14	rs7323466	upstream	34165	The genetic architecture of appendicular lean mass characterized by association analysis in the UK Biobank study.
13:100673616	Refractive error,	2.0E-76	rs724154	upstream	35912	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.

Flanking region : 5 kb 10 kb 50 kb

Position	HGVS	dbSNP id	Phenotype List	Distance	Clinvar Significance
13:100617961	NM_033132.5(ZIC5):c.1590G>A (p.Lys530=)	rs1221997243	not provided	-19743	Likely benign
13:100621234	GRCh37/hg19 13q32.3(chr13:100621234-100635654)x3	NA	See cases	-16470	Uncertain significance
13:100622667	NM_033132.5(ZIC5):c.1155GCC[13] (p.Pro400dup)	rs71114653	not specified\|not provided	-15037	Benign
13:100622667	NM_033132.5(ZIC5):c.1155GCC[13] (p.Pro400dup)	rs71114653	not specified\|not provided	-15037	Benign
13:100622668	NM_033132.5(ZIC5):c.1155GCC[6] (p.Pro395_Pro400del)	rs71114653	not specified	-15036	Benign
13:100622668	NM_033132.5(ZIC5):c.1155GCC[6] (p.Pro395_Pro400del)	rs71114653	not specified	-15036	Benign
13:100622668	NM_033132.5(ZIC5):c.1155GCC[11] (p.Pro400del)	rs71114653	not specified\|not provided	-15036	Benign
13:100622668	NM_033132.5(ZIC5):c.1155GCC[7] (p.Pro396_Pro400del)	rs71114653	not provided	-15036	Likely benign
13:100622668	NM_033132.5(ZIC5):c.1155GCC[5] (p.Pro394_Pro400del)	rs71114653	not provided	-15036	Benign
13:100623527	NM_033132.5(ZIC5):c.331A>T (p.Ser111Cys)	rs188952396	not provided	-14177	Benign
13:100623647	NM_033132.5(ZIC5):c.211C>T (p.His71Tyr)	NA	not specified	-14057	Uncertain significance
13:100623847	NM_033132.5(ZIC5):c.11C>T (p.Pro4Leu)	rs201940459	not provided	-13857	not provided
13:100633995	Single allele	NA	not provided	-3709	Likely benign
13:100634300	NM_007129.5(ZIC2):c.-19G>C	rs971869116	not provided	-3404	Uncertain significance
13:100634319	NM_007129.5(ZIC2):c.1A>T (p.Met1Leu)	NA	Holoprosencephaly 5	-3385	Uncertain significance
13:100634332	NM_007129.5(ZIC2):c.14C>T (p.Ala5Val)	NA	Holoprosencephaly 5	-3372	Uncertain significance
13:100634340	NM_007129.5(ZIC2):c.22C>T (p.Gln8Ter)	rs1594290376	not provided	-3364	Likely pathogenic
13:100634355	NM_007129.5(ZIC2):c.37G>C (p.Gly13Arg)	rs1555332153	not provided	-3349	Uncertain significance
13:100634357	NM_007129.5(ZIC2):c.39G>A (p.Gly13=)	rs1594290388	not provided	-3347	Likely benign
13:100634359	NM_007129.5(ZIC2):c.41T>C (p.Val14Ala)	NA	Holoprosencephaly 5	-3345	Uncertain significance
13:100634370	NM_007129.5(ZIC2):c.52G>C (p.Ala18Pro)	NA	Holoprosencephaly 5	-3334	Uncertain significance
13:100634394	NM_007129.5(ZIC2):c.78GGC[2] (p.Ala31_Ala33del)	NA	Holoprosencephaly 5	-3310	Uncertain significance
13:100634398	NM_007129.5(ZIC2):c.80C>T (p.Ala27Val)	NA	Holoprosencephaly 5	-3306	Uncertain significance
13:100634455	NM_007129.5(ZIC2):c.137A>G (p.Gln46Arg)	NA	not provided	-3249	Uncertain significance
13:100634461	NM_007129.5(ZIC2):c.143G>A (p.Gly48Asp)	NA	Holoprosencephaly 5	-3243	Uncertain significance
13:100634475	NM_007129.5(ZIC2):c.157G>C (p.Ala53Pro)	NA	Holoprosencephaly 5	-3229	Uncertain significance
13:100634489	NM_007129.5(ZIC2):c.171G>C (p.Met57Ile)	rs794726934	not provided	-3215	Uncertain significance
13:100634489	NM_007129.5(ZIC2):c.171G>C (p.Met57Ile)	rs794726934	not provided	-3215	Uncertain significance
13:100634489	NM_007129.5(ZIC2):c.171G>A (p.Met57Ile)	NA	not provided	-3215	Uncertain significance
13:100634495	NM_007129.4(ZIC2):c.177_178ins56	NA	Holoprosencephaly 5	-3209	Pathogenic
13:100634495	NM_007129.4(ZIC2):c.177_178ins56	NA	Holoprosencephaly 5	-3209	Pathogenic
13:100634526	NM_007129.5(ZIC2):c.208T>C (p.Ser70Pro)	NA	See cases	-3178	Uncertain significance
13:100634531	NM_007129.5(ZIC2):c.213G>A (p.Pro71=)	rs189469383	not specified\|Holoprosencephaly 5\|not provided	-3173	Benign
13:100634548	NM_007129.5(ZIC2):c.230_236delinsCA (p.Phe77fs)	rs2053238266	Holoprosencephaly 5	-3156	Pathogenic
13:100634578	NM_007129.5(ZIC2):c.260G>A (p.Gly87Asp)	NA	Holoprosencephaly 5	-3126	Uncertain significance
13:100634579	NM_007129.5(ZIC2):c.261C>T (p.Gly87=)	NA	Holoprosencephaly 5	-3125	Likely benign
13:100634583	NM_007129.5(ZIC2):c.265G>C (p.Ala89Pro)	NA	Holoprosencephaly 5	-3121	Uncertain significance
13:100634600	NM_007129.5(ZIC2):c.282G>C (p.Ala94=)	rs886038582	not specified	-3104	Likely benign
13:100634615	NM_007129.5(ZIC2):c.297G>A (p.Gly99=)	NA	Holoprosencephaly 5	-3089	Likely benign
13:100634638	NM_007129.5(ZIC2):c.321del (p.Tyr108fs)	rs1555332212	Holoprosencephaly 5	-3066	Pathogenic
13:100634666	NM_007129.5(ZIC2):c.348C>A (p.Thr116=)	rs1264657841	not provided	-3038	Likely benign
13:100634697	NM_007129.5(ZIC2):c.381_382del (p.Asp128fs)	rs1456001894	Holoprosencephaly 5	-3007	Likely pathogenic
13:100634710	NM_007129.5(ZIC2):c.397_403del (p.Gly133fs)	rs1594290658	Holoprosencephaly 5	-2994	Pathogenic
13:100634710	NM_007129.5(ZIC2):c.397_403del (p.Gly133fs)	rs1594290658	Holoprosencephaly 5	-2994	Pathogenic
13:100634735	NM_007129.5(ZIC2):c.417C>G (p.Phe139Leu)	NA	not provided	-2969	Uncertain significance
13:100634736	NM_007129.5(ZIC2):c.418G>C (p.Gly140Arg)	rs1164231504	Holoprosencephaly 5	-2968	Uncertain significance
13:100634738	NM_007129.5(ZIC2):c.420G>A (p.Gly140=)	rs747747563	not provided\|Holoprosencephaly 5	-2966	Likely benign
13:100634768	NM_007129.5(ZIC2):c.450C>G (p.His150Gln)	rs1284001088	Holoprosencephaly 5	-2936	Uncertain significance
13:100634777	NM_007129.5(ZIC2):c.459G>T (p.Ala153=)	rs771629736	not specified\|Holoprosencephaly 5	-2927	Likely benign
13:100634811	NM_007129.5(ZIC2):c.494dup (p.His166fs)	rs1555332225	not provided	-2893	Pathogenic
13:100634825	NM_007129.5(ZIC2):c.507C>A (p.His169Gln)	NA	Holoprosencephaly 5	-2879	Uncertain significance
13:100634840	NM_007129.5(ZIC2):c.522G>T (p.Val174=)	NA	Holoprosencephaly 5	-2864	Likely benign
13:100634844	NM_007129.5(ZIC2):c.526A>T (p.Asn176Tyr)	rs767657125	not provided	-2860	Uncertain significance
13:100634846	NM_007129.5(ZIC2):c.528C>T (p.Asn176=)	rs143055297	not specified\|Holoprosencephaly 5\|not provided	-2858	Benign
13:100634864	NM_007129.5(ZIC2):c.546G>T (p.Gly182=)	rs200407312	Holoprosencephaly 5\|not provided	-2840	Benign/Likely benign
13:100634870	NM_007129.5(ZIC2):c.552C>T (p.Pro184=)	rs554801676	not provided\|Holoprosencephaly 5	-2834	Likely benign
13:100634870	NM_007129.5(ZIC2):c.552C>G (p.Pro184=)	NA	Holoprosencephaly 5	-2834	Likely benign
13:100634871	NM_007129.5(ZIC2):c.553G>A (p.Gly185Ser)	NA	Holoprosencephaly 5	-2833	Uncertain significance
13:100634945	NM_007129.5(ZIC2):c.627A>G (p.Gln209=)	rs766439036	not specified	-2759	Likely benign
13:100634955	NM_007129.5(ZIC2):c.637C>T (p.Gln213Ter)	rs753776168	not provided	-2749	Pathogenic
13:100634960	NM_007129.5(ZIC2):c.642C>T (p.Tyr214=)	NA	Holoprosencephaly 5	-2744	Likely benign
13:100634972	NM_007129.5(ZIC2):c.665_676del (p.Gly222_Met225del)	rs980165353	not provided	-2732	Uncertain significance
13:100634991	NM_007129.5(ZIC2):c.673A>G (p.Met225Val)	rs953472306	Holoprosencephaly 5	-2713	Uncertain significance
13:100635001	NM_007129.5(ZIC2):c.683C>G (p.Ala228Gly)	NA	Holoprosencephaly 5	-2703	Uncertain significance
13:100635005	NM_007129.5(ZIC2):c.687G>A (p.Ala229=)	NA	Holoprosencephaly 5	-2699	Likely benign
13:100635007	NM_007129.5(ZIC2):c.692ACC[10] (p.His239dup)	rs398124241	not specified\|Holoprosencephaly 5\|not provided	-2697	Benign/Likely benign
13:100635007	NM_007129.5(ZIC2):c.692ACC[10] (p.His239dup)	rs398124241	not specified\|Holoprosencephaly 5\|not provided	-2697	Benign/Likely benign
13:100635007	NM_007129.5(ZIC2):c.692ACC[11] (p.His238_His239dup)	NA	Holoprosencephaly 5	-2697	Uncertain significance
13:100635007	NM_007129.5(ZIC2):c.692ACC[12] (p.His237_His239dup)	NA	Holoprosencephaly 5	-2697	Uncertain significance
13:100635008	NM_007129.5(ZIC2):c.692ACC[8] (p.His239del)	rs398124241	Holoprosencephaly 5	-2696	Benign
13:100635008	NM_007129.5(ZIC2):c.692ACC[6] (p.His237_His239del)	rs398124241	Holoprosencephaly 5\|not provided	-2696	Uncertain significance
13:100635008	NM_007129.5(ZIC2):c.692ACC[5] (p.His236_His239del)	NA	Holoprosencephaly 5	-2696	Uncertain significance
13:100635034	NM_007129.5(ZIC2):c.716A>C (p.His239Pro)	rs2053242975	Holoprosencephaly 5	-2670	Uncertain significance
13:100635035	NM_007129.5(ZIC2):c.718_720del (p.Pro240del)	NA	Holoprosencephaly 5	-2669	Uncertain significance
13:100635043	NM_007129.5(ZIC2):c.725_728del (p.Ala242fs)	rs1064794138	not provided	-2661	Pathogenic
13:100635057	NM_007129.5(ZIC2):c.739A>G (p.Met247Val)	NA	not specified\|Holoprosencephaly 5	-2647	Uncertain significance
13:100635062	NM_007129.5(ZIC2):c.744G>A (p.Arg248=)	NA	Holoprosencephaly 5	-2642	Likely benign
13:100635111	NM_007129.5(ZIC2):c.793C>T (p.Gln265Ter)	rs1060499563	Holoprosencephaly 5	-2593	Pathogenic
13:100635143	NM_007129.5(ZIC2):c.825A>T (p.Lys275Asn)	NA	Holoprosencephaly 5	-2561	Uncertain significance
13:100635171	NM_007129.5(ZIC2):c.857_858del (p.His286fs)	NA	Holoprosencephaly 5	-2533	Pathogenic
13:100635171	NM_007129.5(ZIC2):c.857_858del (p.His286fs)	NA	Holoprosencephaly 5	-2533	Pathogenic
13:100635173	NM_007129.5(ZIC2):c.855A>G (p.Thr285=)	rs780880109	Holoprosencephaly 5	-2531	Likely benign
13:100635174	NM_007129.5(ZIC2):c.856C>T (p.His286Tyr)	NA	Holoprosencephaly 5	-2530	Uncertain significance
13:100635176	NM_007129.5(ZIC2):c.858C>G (p.His286Gln)	rs1325393230	Holoprosencephaly 5	-2528	Uncertain significance
13:100635194	NM_007129.5(ZIC2):c.876C>G (p.Val292=)	rs1207711011	not provided	-2510	Likely benign
13:100635197	NM_007129.5(ZIC2):c.879C>T (p.Gly293=)	rs138007077	not provided\|Holoprosencephaly 5	-2507	Likely benign
13:100635203	NM_007129.5(ZIC2):c.885G>A (p.Pro295=)	NA	Holoprosencephaly 5	-2501	Likely benign
13:100635232	NM_007129.5(ZIC2):c.914A>T (p.Glu305Val)	rs897501049	Holoprosencephaly 5	-2472	Uncertain significance
13:100635254	NM_007129.5(ZIC2):c.936del (p.Lys312fs)	rs397515499	Holoprosencephaly 5	-2450	Pathogenic
13:100635254	NM_007129.5(ZIC2):c.936del (p.Lys312fs)	rs397515499	Holoprosencephaly 5	-2450	Pathogenic
13:100635275	NM_007129.5(ZIC2):c.957A>G (p.Lys319=)	NA	Holoprosencephaly 5	-2429	Likely benign
13:100635278	NM_007129.5(ZIC2):c.960_961delinsCA (p.Val321Ile)	NA	Holoprosencephaly 5	-2426	Uncertain significance
13:100635286	NM_007129.5(ZIC2):c.968A>G (p.His323Arg)	NA	not provided	-2418	Likely pathogenic
13:100635291	NM_007129.5(ZIC2):c.973C>T (p.Arg325Cys)	NA	Holoprosencephaly 5	-2413	Pathogenic
13:100635291	NM_007129.5(ZIC2):c.973C>A (p.Arg325Ser)	NA	not provided	-2413	Likely pathogenic
13:100635301	NM_007129.5(ZIC2):c.983C>T (p.Thr328Ile)	rs2053244542	Holoprosencephaly 5	-2403	Uncertain significance
13:100635301	NM_007129.5(ZIC2):c.983C>A (p.Thr328Lys)	NA	Holoprosencephaly 5	-2403	Uncertain significance
13:100635337	NM_007129.5(ZIC2):c.1019G>C (p.Cys340Ser)	rs2053244781	Holoprosencephaly 5	-2367	Uncertain significance
13:100635347	NM_007129.5(ZIC2):c.1029C>T (p.Val343=)	NA	not provided	-2357	Benign
13:100635358	NM_007129.5(ZIC2):c.1042_1048del (p.Glu348fs)	rs397515365	Holoprosencephaly 5	-2346	Pathogenic
13:100635358	NM_007129.5(ZIC2):c.1042_1048del (p.Glu348fs)	rs397515365	Holoprosencephaly 5	-2346	Pathogenic
13:100635359	NM_007129.5(ZIC2):c.1041C>A (p.Ser347=)	NA	Holoprosencephaly 5	-2345	Uncertain significance
13:100635376	NM_007129.5(ZIC2):c.1058_1059delinsCT (p.His353Pro)	rs2053244892	Holoprosencephaly 5	-2328	Uncertain significance
13:100635377	NM_007129.5(ZIC2):c.1059C>T (p.His353=)	rs1831992	not specified\|Holoprosencephaly 5\|not provided	-2327	Benign
13:100635377	NM_007129.5(ZIC2):c.1059C>T (p.His353=)	rs1831992	not specified\|Holoprosencephaly 5\|not provided	-2327	Benign
13:100635391	NM_007129.5(ZIC2):c.1073C>A (p.Thr358Lys)	NA	Holoprosencephaly 5	-2313	Uncertain significance
13:100635411	NM_007129.5(ZIC2):c.1075+18C>T	NA	Holoprosencephaly 5	-2293	Likely benign
13:100635606	NM_007129.5(ZIC2):c.1075+213G>A	rs1334586	not provided	-2098	Benign
13:100636542	NM_032813.5(TMTC4):c.1192C>T (p.His398Tyr)	rs587779382	Worster-Drought syndrome	-1162	Uncertain significance
13:100636896	NM_007129.5(ZIC2):c.1076-304T>C	NA	not provided	-808	Likely benign
13:100636950	GRCh38/hg38 13q32.3(chr13:99984696-99986321)x3	NA	See cases	-754	Likely benign
13:100636950	GRCh38/hg38 13q32.3(chr13:99984696-99986321)x3	NA	See cases	-754	Likely benign
13:100637102	NM_007129.5(ZIC2):c.1076-98T>C	NA	not provided	-602	Benign
13:100637195	NM_007129.5(ZIC2):c.1076-5C>T	rs1057518503	not specified	-509	Uncertain significance
13:100637198	NM_007129.5(ZIC2):c.1076-2A>T	rs1555332361	Holoprosencephaly 5	-506	Pathogenic
13:100637206	NM_007129.5(ZIC2):c.1085_1131del (p.Pro362fs)	rs1555332362	Holoprosencephaly 5	-498	Pathogenic
13:100637210	NM_007129.5(ZIC2):c.1086G>C (p.Pro362=)	rs996264199	not provided	-494	Likely benign
13:100637215	NM_007129.5(ZIC2):c.1091_1092del (p.Gln364fs)	rs397515500	Holoprosencephaly 5	-489	Pathogenic
13:100637215	NM_007129.5(ZIC2):c.1091_1092del (p.Gln364fs)	rs397515500	Holoprosencephaly 5	-489	Pathogenic
13:100637216	NM_007129.5(ZIC2):c.1095_1096del (p.Cys365_Glu366delinsTer)	rs1060499562	Holoprosencephaly 5	-488	Pathogenic
13:100637220	NM_007129.5(ZIC2):c.1097dup (p.Phe367fs)	rs886041583	not provided	-484	Pathogenic
13:100637220	NM_007129.5(ZIC2):c.1097_1098del (p.Glu366fs)	rs1060499564	Holoprosencephaly 5	-484	Pathogenic
13:100637220	NM_007129.5(ZIC2):c.1096G>A (p.Glu366Lys)	rs2053256269	Holoprosencephaly 5	-484	Uncertain significance
13:100637251	NM_007129.5(ZIC2):c.1127A>G (p.Asn376Ser)	NA	not provided	-453	Uncertain significance
13:100637270	NM_007129.5(ZIC2):c.1146G>A (p.Lys382=)	NA	Holoprosencephaly 5	-434	Likely benign
13:100637280	NM_007129.5(ZIC2):c.1156del (p.Val386fs)	NA	Holoprosencephaly 5	-424	Pathogenic
13:100637282	NM_007129.5(ZIC2):c.1158C>T (p.Val386=)	rs1594291832	not provided	-422	Likely benign
13:100637291	NM_007129.5(ZIC2):c.1167C>G (p.Ser389=)	NA	Holoprosencephaly 5	-413	Likely benign
13:100637302	NM_007129.5(ZIC2):c.1182_1183dup (p.Cys395fs)	NA	Abnormality of the nervous system	-402	Pathogenic
13:100637323	NM_007129.5(ZIC2):c.1200_1205del (p.Lys400_Tyr402delinsAsn)	rs2053256914	Holoprosencephaly 5	-381	Likely pathogenic
13:100637336	NM_007129.5(ZIC2):c.1215del (p.Ser406fs)	rs1594291863	Holoprosencephaly 5	-368	Pathogenic
13:100637345	NM_007129.5(ZIC2):c.1221G>A (p.Ser407=)	rs369127058	not provided	-359	Likely benign
13:100637349	NM_007129.5(ZIC2):c.1225C>T (p.Arg409Trp)	rs1594291868	Microcephaly;Holoprosencephaly sequence	-355	Likely pathogenic
13:100637351	NM_007129.5(ZIC2):c.1227G>A (p.Arg409=)	NA	Holoprosencephaly 5	-353	Likely benign
13:100637352	NM_007129.5(ZIC2):c.1229_1234del (p.Lys410_His411del)	rs1566405714	Holoprosencephaly 5	-352	Likely pathogenic
13:100637371	NM_007129.5(ZIC2):c.1239+8C>T	rs760273107	not provided	-333	Likely benign
13:100637381	NM_007129.5(ZIC2):c.1239+18G>A	rs139312964	not specified\|Holoprosencephaly 5\|not provided	-323	Benign
13:100637481	NM_007129.5(ZIC2):c.1240-96A>G	NA	not provided	-223	Likely benign
13:100637556	GRCh38/hg38 13q32.3(chr13:99985302-99986409)x3	NA	See cases	-148	Likely benign
13:100637556	GRCh38/hg38 13q32.3(chr13:99985302-99986107)x3	NA	See cases	-148	Likely benign
13:100637556	GRCh38/hg38 13q32.3(chr13:99985302-99986409)x3	NA	See cases	-148	Likely benign
13:100637556	GRCh38/hg38 13q32.3(chr13:99985302-99986107)x3	NA	See cases	-148	Likely benign
13:100637567	NM_007129.5(ZIC2):c.1240-10T>G	rs567951541	not provided	-137	Benign
13:100637579	NM_007129.5(ZIC2):c.1243del (p.His415fs)	NA	Holoprosencephaly 5	-125	Likely pathogenic
13:100637582	NM_007129.5(ZIC2):c.1245T>G (p.His415Gln)	rs794729641	Holoprosencephaly 5	-122	Likely pathogenic
13:100637582	NM_007129.5(ZIC2):c.1245T>G (p.His415Gln)	rs794729641	Holoprosencephaly 5	-122	Likely pathogenic
13:100637594	NM_007129.5(ZIC2):c.1257_1258delinsAA (p.Gln420Lys)	NA	Holoprosencephaly 5	-110	Uncertain significance
13:100637627	NM_007129.5(ZIC2):c.1290C>T (p.Ser430=)	NA	Holoprosencephaly 5	-77	Likely benign
13:100637639	NM_007129.5(ZIC2):c.1302G>A (p.Ser434=)	rs376758883	not provided\|Holoprosencephaly 5	-65	Likely benign
13:100637644	NM_007129.5(ZIC2):c.1307C>T (p.Thr436Met)	NA	Holoprosencephaly 5	-60	Uncertain significance
13:100637651	NM_007129.5(ZIC2):c.1314G>A (p.Pro438=)	rs762579383	Holoprosencephaly 5	-53	Benign
13:100637651	NM_007129.5(ZIC2):c.1317del (p.Leu440fs)	rs1594292057	Holoprosencephaly 5	-53	Pathogenic
13:100637654	NM_007129.5(ZIC2):c.1318dup (p.Leu440fs)	rs397515364	Holoprosencephaly 5	-50	Pathogenic
13:100637654	NM_007129.5(ZIC2):c.1318dup (p.Leu440fs)	rs397515364	Holoprosencephaly 5	-50	Pathogenic
13:100637663	NM_007129.5(ZIC2):c.1326C>T (p.Ser442=)	rs182192729	not specified\|Holoprosencephaly 5\|not provided	-41	Benign
13:100637663	NM_007129.5(ZIC2):c.1326C>T (p.Ser442=)	rs182192729	not specified\|Holoprosencephaly 5\|not provided	-41	Benign
13:100637667	NM_007129.5(ZIC2):c.1330A>G (p.Ser444Gly)	NA	Holoprosencephaly 5	-37	Uncertain significance
13:100637675	NM_007129.5(ZIC2):c.1338G>T (p.Glu446Asp)	NA	Holoprosencephaly 5	-29	Uncertain significance
13:100637684	NM_007129.5(ZIC2):c.1347C>T (p.Ser449=)	rs1023574991	Holoprosencephaly 5	-20	Likely benign
13:100637698	NM_007129.5(ZIC2):c.1361C>T (p.Ser454Phe)	NA	Holoprosencephaly 5	-6	Uncertain significance
13:100637701	NM_007129.5(ZIC2):c.1365AGCGGCGGCGGC[1] (p.Ala467_Ala470del)	NA	not specified	-3	Benign
13:100637702	NM_007129.5(ZIC2):c.1377_1406dup (p.Ala461_Ala470dup)	rs756225250	Holoprosencephaly 5	-2	Pathogenic
13:100637703	NM_007129.5(ZIC2):c.1366GCN[45] (p.Ala456[15])	NA	Holoprosencephaly 5	-1	Pathogenic
13:100637703	NM_007129.5(ZIC2):c.1366GCN[45] (p.Ala456[15])	NA	Holoprosencephaly 5	-1	Pathogenic
13:100637703	NM_007129.5(ZIC2):c.1377_1406del (p.Ala461_Ala470del)	NA	Holoprosencephaly 5	-1	Uncertain significance
13:100637703	NM_007129.5(ZIC2):c.1377_1391del (p.Ala466_Ala470del)	NA	Holoprosencephaly 5	-1	Uncertain significance
13:100637708	NM_007129.5(ZIC2):c.1377_1382dup (p.Ala469_Ala470dup)	rs768673486	Holoprosencephaly 5	4	Uncertain significance
13:100637711	NM_007129.5(ZIC2):c.1374G>A (p.Ala458=)	rs757103144	not provided	7	Likely benign
13:100637714	NM_007129.5(ZIC2):c.1380GGC[5] (p.Ala470dup)	NA	Holoprosencephaly 5	10	Uncertain significance
13:100637714	NM_007129.5(ZIC2):c.1386_1406dup (p.Ala464_Ala470dup)	NA	Holoprosencephaly 5	10	Uncertain significance
13:100637715	NM_007129.5(ZIC2):c.1392_1406del (p.Ala466_Ala470del)	rs761822481	not provided\|Holoprosencephaly 5	11	Uncertain significance
13:100637715	NM_007129.5(ZIC2):c.1382_1411del (p.Ala461_Ala470del)	NA	Holoprosencephaly 5	11	Uncertain significance
13:100637715	NM_007129.5(ZIC2):c.1386_1406del (p.Ala464_Ala470del)	NA	Holoprosencephaly 5	11	Uncertain significance
13:100637720	NM_007129.5(ZIC2):c.1392_1400dup (p.Ala468_Ala470dup)	NA	Holoprosencephaly 5	16	Uncertain significance
13:100637729	NM_007129.5(ZIC2):c.1392T>G (p.Ala464=)	rs921926048	not provided\|Holoprosencephaly 5	25	Likely benign
13:100637729	NM_007129.5(ZIC2):c.1392T>C (p.Ala464=)	NA	Holoprosencephaly 5	25	Likely benign
13:100637729	NM_007129.5(ZIC2):c.1395GGC[6] (p.Ala469_Ala470dup)	NA	Holoprosencephaly 5	25	Uncertain significance
13:100637729	NM_007129.5(ZIC2):c.1392T>A (p.Ala464=)	NA	Holoprosencephaly 5	25	Likely benign
13:100637730	NM_007129.5(ZIC2):c.1397_1411del (p.Ala466_Ala470del)	NA	Holoprosencephaly 5	26	Uncertain significance
13:100637735	NM_007129.5(ZIC2):c.1398G>T (p.Ala466=)	rs748825084	not provided\|Holoprosencephaly 5	31	Likely benign
13:100637735	NM_007129.5(ZIC2):c.1399_1413del (p.Ala467_Val471del)	NA	Holoprosencephaly 5	31	Uncertain significance
13:100637776	NM_007129.5(ZIC2):c.1439C>T (p.Ser480Leu)	NA	Holoprosencephaly 5	72	Uncertain significance
13:100637791	NM_007129.5(ZIC2):c.1454C>T (p.Ala485Val)	NA	Holoprosencephaly 5	87	Uncertain significance
13:100637805	NM_007129.5(ZIC2):c.1480_1527del (p.Gly494_Ser509del)	rs398124240	not provided	101	Uncertain significance
13:100637805	NM_007129.5(ZIC2):c.1480_1527del (p.Gly494_Ser509del)	rs398124240	not provided	101	Uncertain significance
13:100637823	NM_007129.5(ZIC2):c.1501_1524del (p.Gly501_Gly508del)	NA	Holoprosencephaly 5	119	Uncertain significance
13:100637831	NM_007129.5(ZIC2):c.1494C>A (p.Gly498=)	rs949949328	Holoprosencephaly 5	127	Likely benign
13:100637831	NM_007129.5(ZIC2):c.1505_1516dup (p.Ala502_Gly505dup)	NA	Holoprosencephaly 5	127	Uncertain significance
13:100637832	NM_007129.5(ZIC2):c.1505_1516del (p.Ala502_Gly505del)	NA	Holoprosencephaly 5	128	Uncertain significance
13:100637834	NM_007129.5(ZIC2):c.1497C>G (p.Gly499=)	rs186543347	not specified	130	Benign
13:100637834	NM_007129.5(ZIC2):c.1497C>G (p.Gly499=)	rs186543347	not specified	130	Benign
13:100637834	NM_007129.5(ZIC2):c.1497C>T (p.Gly499=)	rs186543347	Holoprosencephaly 5	130	Likely benign
13:100637834	NM_007129.5(ZIC2):c.1497C>A (p.Gly499=)	NA	Holoprosencephaly 5	130	Likely benign
13:100637843	NM_007129.5(ZIC2):c.1506G>T (p.Ala502=)	NA	Holoprosencephaly 5	139	Likely benign
13:100637873	NM_007129.5(ZIC2):c.1536G>C (p.Gly512=)	NA	Holoprosencephaly 5	169	Likely benign
13:100637891	NM_007129.5(ZIC2):c.1554G>A (p.Gly518=)	rs199669243	not specified\|Holoprosencephaly 5	187	Benign/Likely benign
13:100637900	NM_007129.5(ZIC2):c.1563C>A (p.Ser521Arg)	NA	Holoprosencephaly 5	196	Uncertain significance
13:100637924	NM_007129.5(ZIC2):c.1587A>G (p.Glu529=)	NA	Holoprosencephaly 5	220	Likely benign
13:100638090	NM_007129.5(ZIC2):c.166_170dup	NA	not provided	386	Likely benign
13:100638090	NM_007129.5(ZIC2):c.168_170dup	NA	not provided	386	Benign
13:100638090	NM_007129.5(ZIC2):c.169_170dup	NA	not provided	386	Benign
13:100638090	NM_007129.5(ZIC2):c.*170dup	NA	not provided	386	Benign
13:100638193	NM_007129.5(ZIC2):c.*257A>T	NA	not provided	489	Benign
13:100638251	NM_007129.5(ZIC2):c.*315T>G	NA	not provided	547	Benign
13:100638890	NM_007129.5(ZIC2):c.*954T>A	rs760662121	Holoprosencephaly 1\|not specified	1186	Uncertain significance

Position	Population	BlockLength (kb)	Distance	Location with respect to STR	No. of SNPs	SNPs in the Haploblock
13:100588062-100588166	SAS	0.105	-49642	downstream	2	rs61972405, rs958529,
13:100588166-100588210	AFR	0.045	-49538	downstream	2	rs9585291, rs798892,
13:100588166-100588543	AMR	0.378	-49538	downstream	3	rs9585291, rs7988924, rs799451,
13:100588210-100588589	SAS	0.38	-49494	downstream	3	rs7988924, rs7994515, rs733077,
13:100588543-100588589	all_pop	0.047	-49161	downstream	2	rs7994515, rs733077,
13:100588543-100588589	EAS	0.047	-49161	downstream	2	rs7994515, rs733077,
13:100588543-100590824	EUR	2.282	-49161	downstream	16	rs7994515, rs7330772, rs7331015, rs17578011, rs7332342, rs61972406, rs9554651, rs9554652, rs112251989, rs8000392, rs9517932, rs9517933, rs4772256, rs34925053, rs141853679, rs955734,
13:100588724-100589343	AFR	0.62	-48980	downstream	6	rs200215870, rs7331015, rs17578011, rs7332342, rs9554651, rs955465,
13:100588816-100590921	all_pop	2.106	-48888	downstream	16	rs7331015, rs17578011, rs7332342, rs61972406, rs9554651, rs9554652, rs112251989, rs8000392, rs9517932, rs9517933, rs4772256, rs34925053, rs9557344, rs141853679, rs9557345, rs477225,
13:100588816-100590921	AMR	2.106	-48888	downstream	12	rs7331015, rs7332342, rs61972406, rs9554651, rs9554652, rs8000392, rs9517932, rs9517933, rs4772256, rs34925053, rs9557345, rs477225,
13:100588816-100590921	EAS	2.106	-48888	downstream	12	rs7331015, rs9554651, rs9554652, rs8000392, rs9517932, rs9517933, rs4772256, rs34925053, rs9557343, rs9557344, rs9557345, rs477225,
13:100588816-100590921	SAS	2.106	-48888	downstream	16	rs7331015, rs17578011, rs7332342, rs61972406, rs9554651, rs9554652, rs112251989, rs8000392, rs9517932, rs9517933, rs4772256, rs34925053, rs9557344, rs141853679, rs9557345, rs477225,
13:100589598-100590921	AFR	1.324	-48106	downstream	6	rs4772256, rs73567023, rs9557344, rs141853679, rs9557345, rs477225,
13:100591234-100591943	AFR	0.71	-46470	downstream	6	rs4771348, rs58218733, rs9585296, rs73567026, rs9582358, rs239033,
13:100591234-100594557	EUR	3.324	-46470	downstream	11	rs4771348, rs58218733, rs9585296, rs9582358, rs561395669, rs7317261, rs34811171, rs12583077, rs12583081, rs727126, rs958529,
13:100591614-100592131	all_pop	0.518	-46090	downstream	5	rs58218733, rs9585296, rs9582358, rs2390336, rs56139566,
13:100591614-100594096	AMR	2.483	-46090	downstream	12	rs58218733, rs9585296, rs9582358, rs561395669, rs111945145, rs7317261, rs34811171, rs12583077, rs12583081, rs188971689, rs73567033, rs72712,
13:100591614-100594096	SAS	2.483	-46090	downstream	12	rs58218733, rs9585296, rs9582358, rs2390336, rs561395669, rs111945145, rs7317261, rs34811171, rs12583077, rs12583081, rs73567033, rs72712,
13:100592227-100594557	AFR	2.331	-45477	downstream	7	rs111945145, rs7317261, rs34811171, rs16957074, rs73567033, rs727126, rs958529,
13:100592227-100594557	all_pop	2.331	-45477	downstream	8	rs111945145, rs7317261, rs34811171, rs12583077, rs12583081, rs73567033, rs727126, rs958529,
13:100592227-100592264	EAS	0.038	-45477	downstream	2	rs111945145, rs731726,
13:100592795-100594096	EAS	1.302	-44909	downstream	5	rs12583077, rs12583081, rs17474599, rs73567033, rs72712,
13:100594557-100594983	AMR	0.427	-43147	downstream	3	rs9585299, rs543102216, rs958235,
13:100594621-100594821	all_pop	0.201	-43083	downstream	2	rs543102216, rs11235333,
13:100594821-100595522	AFR	0.702	-42883	downstream	5	rs112353331, rs9582359, rs56225799, rs117693820, rs951793,
13:100594821-100597453	EAS	2.633	-42883	downstream	11	rs112353331, rs60064769, rs9517934, rs9517935, rs12876585, rs12876787, rs565213344, rs113410537, rs113013960, rs113710651, rs733203,
13:100594983-100597317	all_pop	2.335	-42721	downstream	13	rs9582359, rs60064769, rs56225799, rs9517934, rs9517935, rs12876585, rs12876787, rs565213344, rs113410537, rs113013960, rs61972409, rs7989483, rs11371065,
13:100594983-100597453	EUR	2.471	-42721	downstream	13	rs9582359, rs60064769, rs56225799, rs117693820, rs9517934, rs9517935, rs12876585, rs12876787, rs565213344, rs113013960, rs61972409, rs7989483, rs733203,
13:100595275-100595323	AMR	0.049	-42429	downstream	2	rs60064769, rs5622579,
13:100595275-100597453	SAS	2.179	-42429	downstream	16	rs60064769, rs56225799, rs117693820, rs9517934, rs9517935, rs12876585, rs12876787, rs147804884, rs565213344, rs113410537, rs113013960, rs115646714, rs61972409, rs150263635, rs113710651, rs733203,
13:100595522-100597453	AMR	1.932	-42182	downstream	9	rs9517934, rs9517935, rs12876585, rs12876787, rs565213344, rs113013960, rs61972409, rs7989483, rs733203,
13:100595534-100595596	AFR	0.063	-42170	downstream	2	rs9517935, rs1287658,
13:100595662-100596111	AFR	0.45	-42042	downstream	2	rs565213344, rs11301396,
13:100596156-100597589	AFR	1.434	-41548	downstream	6	rs115646714, rs61972409, rs7989483, rs7332031, rs560881361, rs733226,
13:100597453-100597589	all_pop	0.137	-40251	downstream	2	rs7332031, rs733226,
13:100597589-100597778	SAS	0.19	-40115	downstream	2	rs7332268, rs733234,
13:100598554-100598678	all_pop	0.125	-39150	downstream	2	rs61972410, rs1287396,
13:100598554-100598678	AMR	0.125	-39150	downstream	2	rs61972410, rs1287396,
13:100598554-100598678	EUR	0.125	-39150	downstream	2	rs61972410, rs1287396,
13:100598554-100598678	SAS	0.125	-39150	downstream	2	rs61972410, rs1287396,
13:100599614-100601327	EAS	1.714	-38090	downstream	5	rs9554654, rs550101730, rs10454024, rs12875399, rs732436,
13:100600168-100600729	AFR	0.562	-37536	downstream	3	rs10454024, rs57596775, rs1287539,
13:100600168-100602614	all_pop	2.447	-37536	downstream	4	rs10454024, rs12875399, rs7324365, rs951793,
13:100600168-100606892	AMR	6.725	-37536	downstream	15	rs10454024, rs12875399, rs7324365, rs9517936, rs61972411, rs9517937, rs12867720, rs9557349, rs9517938, rs9517939, rs9582361, rs35652801, rs4771349, rs4772258, rs733403,
13:100600168-100606892	EUR	6.725	-37536	downstream	15	rs10454024, rs12875399, rs7324365, rs9517936, rs61972411, rs9517937, rs12867720, rs9557349, rs9517938, rs9517939, rs9582361, rs35652801, rs4771349, rs4772258, rs733403,
13:100600168-100606892	SAS	6.725	-37536	downstream	17	rs10454024, rs12875399, rs7324365, rs9517936, rs61972411, rs9517937, rs12867720, rs9585303, rs9557349, rs9517938, rs9517939, rs9582361, rs35652801, rs4771349, rs4772258, rs77537587, rs733403,
13:100602523-100602614	AFR	0.092	-35181	downstream	2	rs112344061, rs951793,
13:100602630-100602848	AFR	0.219	-35074	downstream	3	rs61972411, rs9517937, rs1286772,
13:100602630-100602649	EAS	0.02	-35074	downstream	2	rs61972411, rs951793,
13:100602649-100606892	all_pop	4.244	-35055	downstream	12	rs9517937, rs12867720, rs9585303, rs9557349, rs9517938, rs9517939, rs9582361, rs35652801, rs4771349, rs4772258, rs77537587, rs733403,
13:100602987-100605789	AFR	2.803	-34717	downstream	8	rs9585303, rs142874505, rs9557349, rs116000242, rs9517939, rs9582361, rs35652801, rs1695708,
13:100603259-100626896	EAS	23.638	-34445	downstream	39	rs9557349, rs9582361, rs35652801, rs4771349, rs4772258, rs7334033, rs10647525, rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs751041, rs892254, rs751040, rs751039, rs2390335, rs4771350, rs551137164, rs754592, rs61561441, rs35486709, rs3742253, rs35809370, rs12869870, rs7991547, rs9557351, rs7329444, rs68136751, rs9585307, rs76337191, rs12585539, rs12585543, rs72114376, rs3809368, rs3809369, rs3809370, rs477135,
13:100606096-100606152	AFR	0.057	-31608	downstream	3	rs4771349, rs4772258, rs7753758,
13:100606892-100606906	AFR	0.015	-30812	downstream	2	rs7334033, rs1064752,
13:100607255-100608423	AFR	1.169	-30449	downstream	11	rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs751041, rs7986152, rs892254, rs751040, rs75103,
13:100607255-100608423	all_pop	1.169	-30449	downstream	10	rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs751041, rs892254, rs751040, rs75103,
13:100607255-100609634	AMR	2.38	-30449	downstream	15	rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs202006114, rs751041, rs892254, rs751040, rs751039, rs2390335, rs9517940, rs4771350, rs18353885,
13:100607255-100609634	EUR	2.38	-30449	downstream	14	rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs751041, rs892254, rs751040, rs751039, rs2390335, rs9517940, rs4771350, rs18353885,
13:100607255-100609634	SAS	2.38	-30449	downstream	14	rs12583445, rs11069387, rs11069388, rs945121, rs892252, rs892253, rs751041, rs892254, rs751040, rs751039, rs2390335, rs9517940, rs4771350, rs18353885,
13:100608738-100609634	AFR	0.897	-28966	downstream	4	rs2390335, rs9517940, rs4771350, rs18353885,
13:100608738-100608908	all_pop	0.171	-28966	downstream	2	rs2390335, rs951794,
13:100609017-100609634	all_pop	0.618	-28687	downstream	2	rs4771350, rs18353885,
13:100610200-100610831	AMR	0.632	-27504	downstream	2	rs551137164, rs75459,
13:100610200-100610831	SAS	0.632	-27504	downstream	2	rs551137164, rs75459,
13:100610831-100615365	AFR	4.535	-26873	downstream	11	rs754592, rs7140002, rs114666338, rs190051681, rs35486709, rs201825237, rs76304725, rs9585305, rs3742253, rs16957100, rs11577601,
13:100610831-100615365	all_pop	4.535	-26873	downstream	7	rs754592, rs114666338, rs61561441, rs35486709, rs9585305, rs3742253, rs11577601,
13:100610831-100628740	EUR	17.91	-26873	downstream	25	rs754592, rs35486709, rs3742253, rs571401354, rs9517941, rs35809370, rs35715709, rs12869870, rs9517942, rs7991547, rs9557351, rs7329444, rs9513683, rs68136751, rs9585307, rs12585539, rs12585543, rs1855579, rs72114376, rs3809368, rs3809369, rs3809370, rs4771351, rs9517943, rs7176490,
13:100611290-100628148	SAS	16.859	-26414	downstream	35	rs117779312, rs114666338, rs118075867, rs35486709, rs9585305, rs3742253, rs115776014, rs571401354, rs9517941, rs35809370, rs35715709, rs12869870, rs9517942, rs202161429, rs560149829, rs7991547, rs9557351, rs114626867, rs7329444, rs9513683, rs68136751, rs9585307, rs150135451, rs11619501, rs11619492, rs12585539, rs12585543, rs1855579, rs72114376, rs3809368, rs3809369, rs3840813, rs3809370, rs4771351, rs951794,
13:100612878-100625084	AMR	12.207	-24826	downstream	20	rs35486709, rs3742253, rs571401354, rs9517941, rs35809370, rs35715709, rs12869870, rs9517942, rs7991547, rs9557351, rs7329444, rs9513683, rs68136751, rs9585307, rs12585539, rs12585543, rs1855579, rs72114376, rs3809368, rs380936,
13:100616014-100616363	AFR	0.35	-21690	downstream	2	rs571401354, rs951794,
13:100616014-100616742	all_pop	0.729	-21690	downstream	3	rs571401354, rs9517941, rs3580937,
13:100617033-100628740	all_pop	11.708	-20671	downstream	24	rs35715709, rs12869870, rs9517942, rs202161429, rs560149829, rs7991547, rs9557351, rs114626867, rs7329444, rs9513683, rs68136751, rs9585307, rs150135451, rs12585539, rs12585543, rs1855579, rs72114376, rs3809368, rs3809369, rs3840813, rs3809370, rs4771351, rs9517943, rs7176490,
13:100617305-100621361	AFR	4.057	-20399	downstream	10	rs12869870, rs9517942, rs202161429, rs560149829, rs7991547, rs9557351, rs114626867, rs183164047, rs575843648, rs732944,
13:100621961-100628148	AFR	6.188	-15743	downstream	15	rs150135451, rs148901086, rs188952396, rs148350088, rs12585539, rs12585543, rs1855579, rs72114376, rs3809368, rs3809369, rs3840813, rs3809370, rs80074960, rs4771351, rs951794,
13:100625951-100629227	AMR	3.277	-11753	downstream	5	rs3809370, rs4771351, rs9517943, rs71764901, rs733074,
13:100628740-100629227	AFR	0.488	-8964	downstream	2	rs71764901, rs733074,
13:100629227-100629649	all_pop	0.423	-8477	downstream	2	rs7330744, rs14415973,
13:100631434-100631725	all_pop	0.292	-6270	downstream	2	rs9517944, rs7411375,
13:100631968-100632095	AFR	0.128	-5736	downstream	2	rs76030663, rs143323,
13:100632095-100637102	EAS	5.008	-5609	downstream	6	rs1433231, rs34288864, rs1334586, rs9557352, rs41281116, rs958530,
13:100632095-100637102	SAS	5.008	-5609	downstream	6	rs1433231, rs34288864, rs1334586, rs9557352, rs41281116, rs958530,
13:100632279-100637102	all_pop	4.824	-5425	downstream	6	rs34288864, rs1334586, rs9557352, rs7324637, rs41281116, rs958530,
13:100632279-100637102	AMR	4.824	-5425	downstream	9	rs34288864, rs372873355, rs1831992, rs1334586, rs9557352, rs7324637, rs77731923, rs41281116, rs958530,
13:100632279-100637102	EUR	4.824	-5425	downstream	7	rs34288864, rs1831992, rs1334586, rs9557352, rs7324637, rs41281116, rs958530,
13:100635783-100637663	AFR	1.881	-1921	downstream	8	rs9557352, rs7324637, rs74113757, rs74113758, rs41281116, rs9585308, rs139312964, rs18219272,
13:100638193-100638392	all_pop	0.2	489	upstream	2	rs72656054, rs1354,
13:100638193-100638251	AMR	0.059	489	upstream	2	rs72656054, rs7265605,
13:100638193-100638392	EUR	0.2	489	upstream	3	rs72656054, rs72656056, rs1354,
13:100638392-100639777	AFR	1.386	688	upstream	2	rs13542, rs14304927,
13:100638392-100640097	EAS	1.706	688	upstream	3	rs13542, rs12100237, rs3510805,
13:100639829-100642261	AFR	2.433	2125	upstream	5	rs12100237, rs35108050, rs115584995, rs2390332, rs958531,
13:100639829-100640097	AMR	0.269	2125	upstream	2	rs12100237, rs3510805,
13:100639829-100640097	EUR	0.269	2125	upstream	2	rs12100237, rs3510805,
13:100639829-100642560	SAS	2.732	2125	upstream	3	rs12100237, rs35108050, rs6661344,
13:100641335-100642560	EUR	1.226	3631	upstream	2	rs2390332, rs6661344,
13:100642575-100642578	AFR	0.004	4871	upstream	2	rs7991728, rs7515223,
13:100642575-100642578	all_pop	0.004	4871	upstream	2	rs7991728, rs7515223,
13:100642575-100642578	EUR	0.004	4871	upstream	2	rs7991728, rs7515223,
13:100645723-100646056	AMR	0.334	8019	upstream	2	rs4772260, rs1161979,
13:100645723-100649197	EAS	3.475	8019	upstream	9	rs4772260, rs11619798, rs9557354, rs9557355, rs9557356, rs892251, rs1347190, rs1108130, rs1747478,
13:100645723-100646056	EUR	0.334	8019	upstream	2	rs4772260, rs1161979,
13:100645723-100646056	SAS	0.334	8019	upstream	2	rs4772260, rs1161979,
13:100646056-100646288	all_pop	0.233	8352	upstream	2	rs11619798, rs955735,
13:100646613-100649197	AFR	2.585	8909	upstream	5	rs9557355, rs9557356, rs892251, rs1347190, rs1747478,
13:100646613-100649197	all_pop	2.585	8909	upstream	6	rs9557355, rs9557356, rs892251, rs1347190, rs1108130, rs1747478,
13:100646613-100646731	AMR	0.119	8909	upstream	2	rs9557355, rs955735,
13:100646613-100649197	SAS	2.585	8909	upstream	6	rs9557355, rs9557356, rs892251, rs1347190, rs1108130, rs1747478,
13:100646731-100680399	EUR	33.669	9027	upstream	92	rs9557356, rs892251, rs1347190, rs1108130, rs17474781, rs74411763, rs747544, rs35773744, rs9517948, rs144279585, rs71433443, rs148989225, rs2390331, rs2390330, rs2390329, rs60758919, rs10219960, rs9513686, rs10581730, rs12877142, rs9557357, rs9557358, rs9284185, rs9284186, rs7989832, rs11620029, rs9513687, rs7996890, rs186710887, rs35278577, rs9517950, rs140450912, rs9554656, rs143776335, rs61972425, rs7993157, rs9517952, rs138969166, rs150367782, rs9554658, rs146516427, rs78986418, rs9300582, rs9585312, rs12172801, rs12172788, rs10660894, rs76268543, rs146909677, rs76557116, rs72632685, rs115590667, rs7491713, rs76136826, rs4001011, rs3956541, rs12875075, rs79338391, rs34760167, rs2390334, rs2390333, rs7326232, rs9585316, rs35277344, rs8000506, rs138514888, rs12853853, rs9557362, rs139993784, rs7323466, rs114935480, rs79550743, rs76791677, rs4291789, rs9670776, rs116515653, rs724154, rs561072465, rs144838048, rs111378000, rs61972451, rs78292633, rs9513695, rs141584958, rs59099778, rs1319833, rs78929989, rs150105628, rs572279713, rs9585318, rs2184381, rs1747483,
13:100647612-100651721	AMR	4.11	9908	upstream	11	rs892251, rs1347190, rs1108130, rs17474781, rs74411763, rs747544, rs35773744, rs9517948, rs144279585, rs71433443, rs14898922,
13:100650343-100652439	AFR	2.097	12639	upstream	10	rs114670211, rs747544, rs9517948, rs144279585, rs71433443, rs148989225, rs7330320, rs2390331, rs2390330, rs239032,
13:100650488-100665399	all_pop	14.912	12784	upstream	51	rs747544, rs35773744, rs9517948, rs144279585, rs71433443, rs148989225, rs2390331, rs2390330, rs2390329, rs60758919, rs10219960, rs9513686, rs10581730, rs12877142, rs9557357, rs9557358, rs9284185, rs9284186, rs7989832, rs11620029, rs9513687, rs7996890, rs186710887, rs35278577, rs9517950, rs9554656, rs143776335, rs61972425, rs7993157, rs9517952, rs138969166, rs150367782, rs9554658, rs146516427, rs78986418, rs9300582, rs9585312, rs12172801, rs12172788, rs10660894, rs76268543, rs9554659, rs146909677, rs76557116, rs72632685, rs115590667, rs7491713, rs76136826, rs4001011, rs3956541, rs1287507,
13:100650708-100678751	EAS	28.044	13004	upstream	46	rs9517948, rs71433443, rs2390331, rs2390330, rs2390329, rs10219960, rs10581730, rs12877142, rs9557357, rs9557358, rs9284185, rs7989832, rs11620029, rs9513687, rs7996890, rs35278577, rs9517950, rs143776335, rs61972425, rs7993157, rs150367782, rs9554658, rs146516427, rs12172801, rs12172788, rs10660894, rs9554659, rs146909677, rs76557116, rs72632685, rs7491713, rs4001011, rs3956541, rs12875075, rs34760167, rs2390334, rs7326232, rs9585316, rs8000506, rs12853853, rs9557362, rs7323466, rs4291789, rs724154, rs78292633, rs958531,
13:100651173-100678386	SAS	27.214	13469	upstream	70	rs144279585, rs71433443, rs148989225, rs2390331, rs2390330, rs2390329, rs60758919, rs10219960, rs9513686, rs10581730, rs12877142, rs9557357, rs9557358, rs9284185, rs7989832, rs11620029, rs9513687, rs7996890, rs186710887, rs35278577, rs9517950, rs140450912, rs143776335, rs61972425, rs7993157, rs138969166, rs150367782, rs9554658, rs146516427, rs78986418, rs12172801, rs12172788, rs10660894, rs76268543, rs9554659, rs146909677, rs76557116, rs72632685, rs115590667, rs7491713, rs76136826, rs4001011, rs3956541, rs12875075, rs79338391, rs34760167, rs2390334, rs7326232, rs9585316, rs8000506, rs138514888, rs12853853, rs9557362, rs139993784, rs7323466, rs114935480, rs79550743, rs76791677, rs4291789, rs9670776, rs116515653, rs724154, rs561072465, rs144838048, rs111378000, rs78292633, rs141584958, rs59099778, rs78929989, rs15010562,
13:100652270-100653101	AMR	0.832	14566	upstream	5	rs2390330, rs2390329, rs60758919, rs10219960, rs951368,
13:100653101-100653659	AFR	0.559	15397	upstream	5	rs9513686, rs10581730, rs550879598, rs12877142, rs955735,
13:100653540-100680399	AMR	26.86	15836	upstream	70	rs12877142, rs9557357, rs9557358, rs9284185, rs9284186, rs7989832, rs11620029, rs9513687, rs7996890, rs186710887, rs35278577, rs9517950, rs9554656, rs61972425, rs7993157, rs9517952, rs138969166, rs9554658, rs146516427, rs78986418, rs9300582, rs9585312, rs12172801, rs12172788, rs10660894, rs76268543, rs9554659, rs146909677, rs76557116, rs72632685, rs115590667, rs7491713, rs76136826, rs4001011, rs3956541, rs12875075, rs79338391, rs34760167, rs2390334, rs2390333, rs7326232, rs9585316, rs35277344, rs8000506, rs138514888, rs12853853, rs9557362, rs139993784, rs7323466, rs114935480, rs79550743, rs76791677, rs4291789, rs9670776, rs116515653, rs724154, rs561072465, rs144838048, rs78292633, rs9513695, rs141584958, rs59099778, rs1319833, rs78929989, rs150105628, rs572279713, rs9585318, rs117326501, rs2184381, rs1747483,
13:100653660-100665613	AFR	11.954	15956	upstream	41	rs9557358, rs9284185, rs9284186, rs7989832, rs11620029, rs9513687, rs7996890, rs186710887, rs35278577, rs9517950, rs9554656, rs199808614, rs61972425, rs7993157, rs9585311, rs9517952, rs138969166, rs9554658, rs75803475, rs74113772, rs78986418, rs9300582, rs9582363, rs9585312, rs12172801, rs12172788, rs10660894, rs76268543, rs9585313, rs146909677, rs141460376, rs76557116, rs72632685, rs115590667, rs7491713, rs76136826, rs4001011, rs3956541, rs549368216, rs12875075, rs7933839,
13:100666633-100669414	AFR	2.782	28929	upstream	12	rs2390334, rs2390333, rs73568909, rs7326232, rs79922775, rs9585316, rs35277344, rs79195482, rs8000506, rs74113774, rs114031274, rs967118,
13:100666633-100667303	all_pop	0.671	28929	upstream	3	rs2390334, rs2390333, rs732623,
13:100667862-100678751	all_pop	10.89	30158	upstream	26	rs9585316, rs35277344, rs8000506, rs138514888, rs12853853, rs9557362, rs139993784, rs7323466, rs114935480, rs79550743, rs76791677, rs4291789, rs9670776, rs116515653, rs724154, rs561072465, rs144838048, rs78292633, rs9513695, rs141584958, rs59099778, rs1319833, rs78929989, rs150105628, rs572279713, rs958531,
13:100669545-100673871	AFR	4.327	31841	upstream	15	rs138514888, rs12853853, rs9557362, rs139993784, rs7323466, rs114935480, rs79550743, rs76791677, rs4291789, rs9670776, rs114849780, rs116515653, rs724154, rs56118762, rs56107246,
13:100675490-100679576	AFR	4.087	37786	upstream	13	rs9513695, rs141584958, rs60882647, rs59099778, rs1319833, rs374676264, rs78929989, rs140789668, rs150105628, rs572279713, rs7321379, rs9585318, rs218438,
13:100680288-100680307	AFR	0.02	42584	upstream	2	rs78998515, rs7476602,
13:100680656-100680740	AFR	0.085	42952	upstream	2	rs9585320, rs14725099,
13:100680656-100680856	all_pop	0.201	42952	upstream	3	rs9585320, rs116603432, rs7708027,
13:100680656-100680856	AMR	0.201	42952	upstream	3	rs9585320, rs116603432, rs7708027,
13:100680656-100680856	EUR	0.201	42952	upstream	3	rs9585320, rs116603432, rs7708027,
13:100680656-100680856	SAS	0.201	42952	upstream	3	rs9585320, rs116603432, rs7708027,
13:100680803-100680856	AFR	0.054	43099	upstream	2	rs116603432, rs7708027,
13:100681190-100681235	SAS	0.046	43486	upstream	2	rs17578253, rs54880920,
13:100681235-100686908	EAS	5.674	43531	upstream	4	rs548809201, rs34694508, rs9557363, rs955736,
13:100681306-100683729	all_pop	2.424	43602	upstream	8	rs150858147, rs9585321, rs117695800, rs201499579, rs78145230, rs149042254, rs151181736, rs3469450,
13:100681306-100688671	AMR	7.366	43602	upstream	20	rs150858147, rs9585321, rs117695800, rs201499579, rs78145230, rs149042254, rs151181736, rs34694508, rs74113775, rs1368513, rs9557363, rs7326295, rs9585322, rs149677210, rs7996571, rs147584290, rs9557364, rs563886644, rs536158693, rs958532,
13:100681306-100690235	EUR	8.93	43602	upstream	29	rs150858147, rs9585321, rs117695800, rs201499579, rs78145230, rs149042254, rs151181736, rs34694508, rs74358181, rs74113775, rs1368513, rs9557363, rs7326295, rs9585322, rs149677210, rs7996571, rs147584290, rs9557364, rs563886644, rs536158693, rs566570682, rs9585326, rs370423940, rs78497046, rs9585327, rs9557365, rs149826824, rs368893443, rs14579051,
13:100681306-100690235	SAS	8.93	43602	upstream	24	rs150858147, rs9585321, rs117695800, rs78145230, rs149042254, rs151181736, rs34694508, rs74358181, rs74113775, rs9557363, rs9585322, rs149677210, rs147584290, rs9557364, rs563886644, rs536158693, rs566570682, rs9585326, rs370423940, rs78497046, rs9585327, rs149826824, rs368893443, rs14579051,
13:100681569-100687861	AFR	6.293	43865	upstream	24	rs61296784, rs9585321, rs139416150, rs117695800, rs201499579, rs78145230, rs149042254, rs78753272, rs151181736, rs74113775, rs1368513, rs9557363, rs7326295, rs9585322, rs149677210, rs145436630, rs9585323, rs7996571, rs9300583, rs74113778, rs147584290, rs115497051, rs563886644, rs53615869,
13:100684432-100684922	all_pop	0.491	46728	upstream	3	rs1368513, rs9557363, rs732629,
13:100685032-100685169	all_pop	0.138	47328	upstream	2	rs9585322, rs14967721,
13:100685394-100687861	all_pop	2.468	47690	upstream	5	rs7996571, rs147584290, rs9557364, rs563886644, rs53615869,
13:100687438-100687861	EAS	0.424	49734	upstream	2	rs563886644, rs53615869,

No Alu found near the repeat

Conservation score was not calculated