STRIDE-DB

Chromosome	18:53253385-53253460
Reference length	25
Motif	AGC
Functional region	intronic

No population frequency data found

Position	Disease/Trait	P-value	SNPs	Location with respect to STR	distance	Study
18:53204864	Depressed affect,	6.0E-12	rs611439	downstream	-48521	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.
18:53205938	Serum creatinine levels,	9.0E-10	rs17597926	downstream	-47447	A cross-population atlas of genetic associations for 220 human phenotypes.
18:53207207	Positive affect,	9.0E-10	rs1452787	downstream	-46178	Multivariate genome-wide analyses of the well-being spectrum.
18:53207207	Neuroticism,	4.0E-10	rs1452787	downstream	-46178	Multivariate genome-wide analyses of the well-being spectrum.
18:53207207	Depressive symptoms,	5.0E-10	rs1452787	downstream	-46178	Multivariate genome-wide analyses of the well-being spectrum.
18:53207207	Life satisfaction,	2.0E-8	rs1452787	downstream	-46178	Multivariate genome-wide analyses of the well-being spectrum.
18:53207207	Depression (broad),	2.0E-7	rs1452787	downstream	-46178	Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.
18:53207207	Sclerosing cholangitis and ulcerative colitis (combined),	3.0E-8	rs1452787	downstream	-46178	Genome-wide association analysis in primary sclerosing cholangitis and ulcerative colitis identifies risk loci at GPR35 and TCF4.
18:53207207	Major depressive disorder,	2.0E-12	rs1452787	downstream	-46178	Bi-ancestral depression GWAS in the Million Veteran Program and meta-analysis in >1.2 million individuals highlight new therapeutic directions.
18:53210302	Loneliness (MTAG),	4.0E-17	rs613872	downstream	-43083	Elucidating the genetic basis of social interaction and isolation.
18:53210302	Loneliness,	5.0E-14	rs613872	downstream	-43083	Elucidating the genetic basis of social interaction and isolation.
18:53210302	Ability to confide in someone,	2.0E-9	rs613872	downstream	-43083	Elucidating the genetic basis of social interaction and isolation.
18:53210302	Educational attainment (years of education),	1.0E-12	rs613872	downstream	-43083	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.
18:53210302	Body mass index,	1.0E-10	rs613872	downstream	-43083	Meta-analysis of genome-wide association studies for body fat distribution in 694,649 individuals of European ancestry.
18:53210302	Mood instability,	1.0E-14	rs613872	downstream	-43083	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.
18:53210302	Male-pattern baldness,	5.0E-8	rs613872	downstream	-43083	Dissection of genetic variation and evidence for pleiotropy in male pattern baldness.
18:53210302	Subcortical volume (MOSTest),	8.0E-9	rs613872	downstream	-43083	Understanding the genetic determinants of the brain with MOSTest.
18:53210302	Educational attainment (years of education),	2.0E-18	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53210302	White blood cell count,	1.0E-11	rs613872	downstream	-43083	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.
18:53210302	C-reactive protein levels,	9.0E-9	rs613872	downstream	-43083	Using Mendelian randomization to evaluate the causal relationship between serum C-reactive protein levels and age-related macular degeneration.
18:53210302	Household income (MTAG),	6.0E-11	rs613872	downstream	-43083	Genome-wide analysis identifies molecular systems and 149 genetic loci associated with income.
18:53210302	Monocyte count,	3.0E-12	rs613872	downstream	-43083	Trans-ethnic and Ancestry-Specific Blood-Cell Genetics in 746,667 Individuals from 5 Global Populations.
18:53210302	General factor of neuroticism,	2.0E-9	rs613872	downstream	-43083	Genetic contributions to two special factors of neuroticism are associated with affluence, higher intelligence, better health, and longer life.
18:53210302	Fuchs's corneal dystrophy,	1.0E-18	rs613872	downstream	-43083	E2-2 protein and Fuchs's corneal dystrophy.
18:53210302	Central corneal thickness (MTAG),	2.0E-21	rs613872	downstream	-43083	Association of Novel Loci With Keratoconus Susceptibility in a Multitrait Genome-Wide Association Study of the UK Biobank Database and Canadian Longitudinal Study on Aging.
18:53210302	Experiencing mood swings,	2.0E-12	rs613872	downstream	-43083	Item-level analyses reveal genetic heterogeneity in neuroticism.
18:53210302	Educational attainment (MTAG),	9.0E-20	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53210302	Self-reported math ability,	5.0E-11	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53210302	Educational attainment,	2.0E-12	rs613872	downstream	-43083	Genetic Risk for Smoking: Disentangling Interplay Between Genes and Socioeconomic Status.
18:53210302	Self-reported math ability (MTAG),	8.0E-14	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53210302	Cognitive performance (MTAG),	2.0E-10	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53210302	Highest math class taken (MTAG),	1.0E-18	rs613872	downstream	-43083	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53213326	Menarche (age at onset),	2.0E-10	rs12607857	downstream	-40059	Leveraging Polygenic Functional Enrichment to Improve GWAS Power.
18:53214865	Lymphocyte counts,	3.0E-8	rs2123392	downstream	-38520	A cross-population atlas of genetic associations for 220 human phenotypes.
18:53227648	Life satisfaction,	1.0E-11	rs584564	downstream	-25737	Multivariate genome-wide analyses of the well-being spectrum.
18:53230650	Morningness,	3.0E-8	rs66791238	downstream	-22735	Genome-wide analysis of insomnia in 1,331,010 individuals identifies new risk loci and functional pathways.
18:53230859	Prostate cancer,	3.0E-8	rs28607662	downstream	-22526	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.
18:53230859	Prostate cancer (advanced),	5.0E-6	rs28607662	downstream	-22526	Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.
18:53242137	Refractive error,	4.0E-12	rs41396445	downstream	-11248	Meta-analysis of 542,934 subjects of European ancestry identifies new genes and mechanisms predisposing to refractive error and myopia.
18:53244414	Self-rated health,	5.0E-8	rs2924322	downstream	-8971	Molecular genetic contributions to self-rated health.
18:53244414	Hand grip strength,	6.0E-8	rs2924322	downstream	-8971	Large-scale GWAS identifies multiple loci for hand grip strength providing biological insights into muscular fitness.
18:53251562	Schizophrenia,	9.0E-11	rs17598729	downstream	-1823	Genome-Wide Association Study Detected Novel Susceptibility Genes for Schizophrenia and Shared Trans-Populations/Diseases Genetic Effect.
18:53251725	Cigarettes smoked per day (MTAG),	9.0E-9	rs4144686	downstream	-1660	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.
18:53251725	Smoking behaviour (cigarettes smoked per day),	1.0E-8	rs4144686	downstream	-1660	Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use.
18:53252388	Systolic blood pressure,	5.0E-13	rs599550	downstream	-997	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.
18:53252388	Loneliness,	6.0E-14	rs599550	downstream	-997	Phenome-wide investigation of health outcomes associated with genetic predisposition to loneliness.
18:53252388	Pulse pressure,	7.0E-10	rs599550	downstream	-997	Trans-ethnic association study of blood pressure determinants in over 750,000 individuals.
18:53252388	Depressed affect,	4.0E-17	rs599550	downstream	-997	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.
18:53252388	Post-traumatic stress disorder (mental health questionnaire or predicted),	2.0E-10	rs599550	downstream	-997	Using phenotype risk scores to enhance gene discovery for generalized anxiety disorder and posttraumatic stress disorder.
18:53252388	Neuroticism conditioned on cognitive performance (multi-trait conditioning and joint analysis),	5.0E-9	rs599550	downstream	-997	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.
18:53252388	Feeling lonely,	7.0E-11	rs599550	downstream	-997	Item-level analyses reveal genetic heterogeneity in neuroticism.
18:53252388	Feeling fed-up,	3.0E-14	rs599550	downstream	-997	Item-level analyses reveal genetic heterogeneity in neuroticism.
18:53252388	Neuroticism conditioned on self-rated math ability (multi-trait conditioning and joint analysis),	5.0E-8	rs599550	downstream	-997	Multivariate genome-wide analysis of education, socioeconomic status and brain phenome.
18:53253410	Autism spectrum disorder or schizophrenia,	9.0E-10	rs12954356	upstream	25	Meta-analysis of GWAS of over 16,000 individuals with autism spectrum disorder highlights a novel locus at 10q24.32 and a significant overlap with schizophrenia.
18:53260732	Age at first birth,	6.0E-9	rs590076	upstream	7347	Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour.
18:53274398	Resistant hypertension,	3.0E-6	rs117652372	upstream	21013	A genome-wide association study identifies a novel candidate locus at the DLGAP1 gene with susceptibility to resistant hypertension in the Japanese population.
18:53276589	Brain shape (segment 2),	4.0E-9	rs10871582	upstream	23204	Shared heritability of human face and brain shape.
18:53294569	Highest math class taken,	2.0E-8	rs644279	upstream	41184	Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals.
18:53296927	Depressed affect,	4.0E-9	rs12457157	upstream	43542	Meta-analysis of genome-wide association studies for neuroticism in 449,484 individuals identifies novel genetic loci and pathways.
18:53301527	Heel bone mineral density,	1.0E-10	rs6566169	upstream	48142	An atlas of genetic influences on osteoporosis in humans and mice.

Flanking region : 5 kb 10 kb 50 kb

Position	HGVS	dbSNP id	Phenotype List	Distance	Clinvar Significance
18:53234540	GRCh37/hg19 18q21.2(chr18:53234540-53237513)x3	NA	not provided	-18845	Benign
18:53242819	GRCh38/hg38 18q21.2-21.31(chr18:55575588-57207463)x1	NA	See cases	-10566	Pathogenic
18:53242819	GRCh38/hg38 18q21.2-21.31(chr18:55575588-57207463)x1	NA	See cases	-10566	Pathogenic
18:53243454	Single allele	NA	Intellectual disability, mild	-9931	Pathogenic
18:53252285	NM_001083962.2(TCF4):c.145+226C>T	rs12455881	not provided	-1100	Benign
18:53252388	NM_001083962.2(TCF4):c.145+123C>T	NA	not provided	-997	Benign
18:53252504	NM_001083962.2(TCF4):c.145+7A>G	NA	Pitt-Hopkins syndrome	-881	Likely benign
18:53252505	NM_001083962.2(TCF4):c.145+6T>C	rs2097628925	Pitt-Hopkins syndrome	-880	Likely benign
18:53252508	NM_001083962.2(TCF4):c.145+3A>G	NA	Pitt-Hopkins syndrome	-877	Uncertain significance
18:53252510	NM_001083962.2(TCF4):c.145+1G>A	rs1555782724	Pitt-Hopkins syndrome	-875	Likely pathogenic
18:53252520	NM_001083962.2(TCF4):c.136A>G (p.Thr46Ala)	rs2097629150	Pitt-Hopkins syndrome	-865	Uncertain significance
18:53252532	NM_001083962.2(TCF4):c.124A>G (p.Ser42Gly)	rs796053423	not provided\|Pitt-Hopkins syndrome	-853	Uncertain significance
18:53252532	NM_001083962.2(TCF4):c.124A>G (p.Ser42Gly)	rs796053423	not provided\|Pitt-Hopkins syndrome	-853	Uncertain significance
18:53252533	NM_001083962.2(TCF4):c.123A>G (p.Ala41=)	rs1603624677	not provided\|Pitt-Hopkins syndrome	-852	Likely benign
18:53252549	NM_001083962.2(TCF4):c.107G>A (p.Gly36Glu)	rs2097629411	Pitt-Hopkins syndrome	-836	Uncertain significance
18:53252572	NM_001083962.2(TCF4):c.84T>C (p.Pro28=)	rs199540114	not provided\|Pitt-Hopkins syndrome	-813	Likely benign
18:53252583	NM_001083962.2(TCF4):c.73A>G (p.Met25Val)	rs2097629744	Pitt-Hopkins syndrome	-802	Likely benign
18:53252586	NM_001083962.2(TCF4):c.73-3T>C	rs148658897	not specified\|Pitt-Hopkins syndrome\|History of neurodevelopmental disorder	-799	Benign
18:53252586	NM_001083962.2(TCF4):c.73-3T>C	rs148658897	not specified\|Pitt-Hopkins syndrome\|History of neurodevelopmental disorder	-799	Benign
18:53252594	NM_001083962.2(TCF4):c.73-11G>T	NA	Pitt-Hopkins syndrome	-791	Likely benign
18:53252595	NM_001083962.2(TCF4):c.73-12T>G	NA	Pitt-Hopkins syndrome	-790	Likely benign
18:53252602	NM_001083962.2(TCF4):c.73-21_73-19del	NA	Pitt-Hopkins syndrome	-783	Likely benign
18:53252889	NM_001083962.2(TCF4):c.73-306G>A	rs34603418	not provided	-496	Benign
18:53254028	NM_001083962.2(TCF4):c.72+248C>T	rs75754713	not provided	643	Benign
18:53254072	NM_001083962.2(TCF4):c.72+204del	NA	not provided	687	Benign
18:53254265	NM_001083962.2(TCF4):c.72+8_72+11del	rs749161770	not specified	880	Uncertain significance
18:53254306	NM_001083962.2(TCF4):c.41_42del (p.Lys14fs)	rs1603624808	not provided	921	Likely pathogenic
18:53254307	NM_001083962.2(TCF4):c.41A>T (p.Lys14Ile)	rs1603624809	not provided\|Pitt-Hopkins syndrome	922	Likely benign
18:53254312	NM_001083962.2(TCF4):c.36G>C (p.Thr12=)	NA	Pitt-Hopkins syndrome	927	Likely benign
18:53254313	NM_001083962.2(TCF4):c.35C>T (p.Thr12Met)	NA	Seizure	928	Likely benign
18:53254339	NM_001083962.2(TCF4):c.9C>G (p.His3Gln)	NA	Pitt-Hopkins syndrome	954	Uncertain significance
18:53254340	NM_001083962.2(TCF4):c.8A>G (p.His3Arg)	NA	not provided	955	Likely benign
18:53254343	NM_001083962.2(TCF4):c.5A>T (p.His2Leu)	NA	Pitt-Hopkins syndrome	958	Likely benign
18:53255249	NM_001083962.2(TCF4):c.-21+20G>A	rs1555785143	not specified	1864	Likely benign
18:53255251	NM_001083962.2(TCF4):c.-21+18C>T	rs1248173869	not specified	1866	Likely benign
18:53255257	NM_001083962.2(TCF4):c.-21+12C>T	rs1055665608	not specified	1872	Likely benign
18:53255259	NM_001083962.2(TCF4):c.-21+10G>T	rs886053960	Pitt-Hopkins syndrome	1874	Uncertain significance
18:53255267	NM_001083962.2(TCF4):c.-21+2T>A	rs1568471128	Corneal dystrophy, Fuchs endothelial, 3\|not provided	1882	Uncertain significance
18:53255277	NM_001083962.2(TCF4):c.-29G>A	rs796053410	not specified	1892	Likely benign
18:53255277	NM_001083962.2(TCF4):c.-29G>A	rs796053410	not specified	1892	Likely benign
18:53255285	NM_001083962.2(TCF4):c.-37C>T	rs796053409	not specified	1900	Benign
18:53255285	NM_001083962.2(TCF4):c.-37C>T	rs796053409	not specified	1900	Benign
18:53255289	NM_001083962.2(TCF4):c.-41G>A	rs1603624917	not provided	1904	Likely benign
18:53255325	NM_001083962.2(TCF4):c.-77C>G	rs1048318120	Pitt-Hopkins syndrome	1940	Uncertain significance
18:53255335	NM_001083962.2(TCF4):c.-87G>A	rs533414588	Pitt-Hopkins syndrome	1950	Benign
18:53255350	NM_001083962.2(TCF4):c.-102G>A	rs2097670764	Pitt-Hopkins syndrome	1965	Uncertain significance
18:53255361	NM_001083962.2(TCF4):c.-113C>G	rs866235198	Pitt-Hopkins syndrome	1976	Uncertain significance
18:53255373	NM_001083962.2(TCF4):c.-125C>T	rs551645393	Pitt-Hopkins syndrome	1988	Benign
18:53255387	NM_001083962.2(TCF4):c.-160CGG[8]	rs886053961	Pitt-Hopkins syndrome	2002	Uncertain significance
18:53255432	NM_001243226.3(TCF4):c.287-1065T>A	rs930984050	Pitt-Hopkins syndrome	2047	Uncertain significance
18:53255496	NM_001243226.3(TCF4):c.287-1129C>T	rs886053962	Pitt-Hopkins syndrome	2111	Uncertain significance
18:53255520	NM_001243226.3(TCF4):c.287-1153G>A	rs886053963	Pitt-Hopkins syndrome	2135	Uncertain significance
18:53255610	NM_001243226.3(TCF4):c.287-1243A>C	rs886053964	Pitt-Hopkins syndrome	2225	Uncertain significance
18:53255701	NM_001243226.3(TCF4):c.287-1334G>A	rs113395332	Pitt-Hopkins syndrome	2316	Benign
18:53255706	NM_001243226.3(TCF4):c.287-1339A>C	rs1603624952	not provided	2321	Uncertain significance
18:53255709	NM_001243230.2(TCF4):c.58A>G (p.Lys20Glu)	rs2097674336	Pitt-Hopkins syndrome	2324	Uncertain significance
18:53255722	NM_001243226.3(TCF4):c.287-1355T>G	rs886053965	Pitt-Hopkins syndrome	2337	Uncertain significance
18:53255754	NM_001243230.2(TCF4):c.13A>G (p.Lys5Glu)	rs1373298140	not provided	2369	Uncertain significance
18:53255759	NM_001243226.3(TCF4):c.287-1392G>A	rs1057518280	not specified	2374	Uncertain significance
18:53255853	NM_001243226.3(TCF4):c.287-1486G>T	rs2097675348	Pitt-Hopkins syndrome	2468	Uncertain significance
18:53269093	GRCh37/hg19 18q21.2(chr18:53269093-53321026)x1	NA	See cases	15708	Likely pathogenic
18:53277008	GRCh37/hg19 18q21.2(chr18:53277008-53428347)	NA	not specified	23623	Likely pathogenic
18:53280664	GRCh37/hg19 18q21.2(chr18:53280664-53428347)x1	NA	See cases	27279	Uncertain significance
18:53289889	GRCh37/hg19 18q21.2(chr18:53289889-53383013)	NA	not specified	36504	Likely pathogenic
18:53298576	NM_001243226.3(TCF4):c.239C>T (p.Thr80Met)	rs918143909	not provided	45191	Likely benign
18:53298578	NM_001243226.3(TCF4):c.237G>A (p.Trp79Ter)	NA	Pitt-Hopkins syndrome	45193	Uncertain significance
18:53302964	NM_001243226.3(TCF4):c.165C>T (p.Cys55_Tyr56=)	NA	See cases	49579	Uncertain significance
18:53303043	NM_001243226.3(TCF4):c.86T>C (p.Met29Thr)	rs748774594	Pitt-Hopkins syndrome	49658	Uncertain significance
18:53303055	NM_001243226.3(TCF4):c.74del (p.Asn25fs)	rs752700752	not provided\|Pitt-Hopkins syndrome	49670	Conflicting interpretations of pathogenicity
18:53303070	NM_001243226.3(TCF4):c.59T>G (p.Phe20Cys)	NA	not provided	49685	Uncertain significance
18:53303198	GRCh37/hg19 18q21.2(chr18:53303198-53327370)x1	NA	not provided	49813	Uncertain significance

Position	Population	BlockLength (kb)	Distance	Location with respect to STR	No. of SNPs	SNPs in the Haploblock
18:53204136-53223387	AFR	19.252	-49249	downstream	9	rs658905, rs9957688, rs1452787, rs17089888, rs140289944, rs658977, rs2123392, rs17089892, rs3411286,
18:53210302-53214865	all_pop	4.564	-43083	downstream	4	rs613872, rs12607857, rs658977, rs212339,
18:53213887-53214865	AMR	0.979	-39498	downstream	2	rs658977, rs212339,
18:53215142-53225049	all_pop	9.908	-38243	downstream	4	rs12963873, rs581653, rs34112862, rs58713,
18:53215142-53225049	AMR	9.908	-38243	downstream	5	rs12963873, rs581653, rs191707548, rs34112862, rs58713,
18:53215142-53225049	SAS	9.908	-38243	downstream	4	rs12963873, rs581653, rs34112862, rs58713,
18:53227648-53230650	EUR	3.003	-25737	downstream	3	rs584564, rs72932743, rs6679123,
18:53230650-53234728	all_pop	4.079	-22735	downstream	2	rs66791238, rs3453367,
18:53230650-53238971	AMR	8.322	-22735	downstream	3	rs66791238, rs34533676, rs53864894,
18:53230650-53253423	EAS	22.774	-22735	downstream	14	rs66791238, rs538648944, rs543166350, rs8098032, rs72627232, rs41396445, rs12456652, rs3077738, rs17598729, rs4144686, rs35175513, rs12455881, rs34603418, rs14901156,
18:53231313-53236659	AFR	5.347	-22072	downstream	3	rs10503004, rs9953708, rs995983,
18:53239302-53251698	AFR	12.397	-14083	downstream	6	rs8098032, rs41396445, rs9957098, rs7227441, rs34291028, rs1708989,
18:53239302-53242137	AMR	2.836	-14083	downstream	3	rs8098032, rs72627232, rs4139644,
18:53239302-53252285	EUR	12.984	-14083	downstream	14	rs8098032, rs72627232, rs41396445, rs11151167, rs2924322, rs33980799, rs34291028, rs618869, rs12456652, rs3077738, rs17598729, rs4144686, rs35175513, rs1245588,
18:53239302-53242137	SAS	2.836	-14083	downstream	3	rs8098032, rs72627232, rs4139644,
18:53239916-53244442	all_pop	4.527	-13469	downstream	4	rs72627232, rs41396445, rs2924322, rs3398079,
18:53244414-53244442	AMR	0.029	-8971	downstream	2	rs2924322, rs3398079,
18:53244414-53244442	SAS	0.029	-8971	downstream	2	rs2924322, rs3398079,
18:53246685-53252285	all_pop	5.601	-6700	downstream	8	rs34291028, rs618869, rs12456652, rs3077738, rs17598729, rs4144686, rs35175513, rs1245588,
18:53248151-53253423	AMR	5.273	-5234	downstream	10	rs618869, rs12456652, rs3077738, rs17598729, rs4144686, rs35175513, rs12455881, rs599550, rs34603418, rs14901156,
18:53248151-53253423	SAS	5.273	-5234	downstream	10	rs618869, rs12456652, rs3077738, rs17598729, rs4144686, rs35175513, rs12455881, rs599550, rs34603418, rs14901156,
18:53252388-53252889	EUR	0.502	-997	downstream	2	rs599550, rs3460341,
18:53252889-53253423	all_pop	0.535	-496	downstream	2	rs34603418, rs14901156,
18:53253423-53254028	EUR	0.606	38	upstream	2	rs149011565, rs7575471,
18:53254071-53254741	EAS	0.671	686	upstream	2	rs34071688, rs7293275,
18:53254741-53273496	all_pop	18.756	1356	upstream	19	rs72932757, rs35325237, rs12457949, rs13381608, rs590076, rs34556259, rs57884215, rs596668, rs66485076, rs17061809, rs35178579, rs17514172, rs34341606, rs682245, rs34529177, rs17514242, rs68034392, rs12455205, rs5775638,
18:53254741-53272160	SAS	17.42	1356	upstream	17	rs72932757, rs35325237, rs12457949, rs590076, rs34556259, rs57884215, rs596668, rs66485076, rs17061809, rs35178579, rs17514172, rs34341606, rs682245, rs34529177, rs17514242, rs68034392, rs1245520,
18:53256800-53288031	AMR	31.232	3415	upstream	26	rs35325237, rs12457949, rs13381608, rs590076, rs34556259, rs57884215, rs596668, rs66485076, rs17061809, rs35178579, rs17514172, rs34341606, rs682245, rs34529177, rs17514242, rs68034392, rs12455205, rs12458118, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs35018085, rs1642313, rs3518644,
18:53258609-53288031	EUR	29.423	5224	upstream	27	rs12457949, rs13381608, rs590076, rs34556259, rs57884215, rs596668, rs66485076, rs17061809, rs35178579, rs17514172, rs34341606, rs682245, rs34529177, rs17514242, rs68034392, rs12455205, rs635538, rs12458118, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs35018085, rs1642313, rs72932792, rs3518644,
18:53259146-53273496	AFR	14.351	5761	upstream	8	rs13381608, rs590076, rs142060455, rs76551977, rs10503005, rs682245, rs17514242, rs5775638,
18:53259146-53288031	EAS	28.886	5761	upstream	23	rs13381608, rs590076, rs34556259, rs57884215, rs66485076, rs17061809, rs35178579, rs17514172, rs34341606, rs682245, rs34529177, rs17514242, rs68034392, rs12455205, rs12458118, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs35018085, rs1642313, rs3518644,
18:53273614-53288031	SAS	14.418	20229	upstream	10	rs635538, rs12458118, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs35018085, rs1642313, rs3518644,
18:53274828-53287579	AFR	12.752	21443	upstream	14	rs17089898, rs77666019, rs12458118, rs9951819, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs9959863, rs35018085, rs1942438, rs1642313, rs196134,
18:53276116-53287570	all_pop	11.455	22731	upstream	8	rs12458118, rs9951280, rs10871582, rs59623516, rs2156008, rs616580, rs35018085, rs164231,
18:53289032-53289076	all_pop	0.045	35647	upstream	2	rs538593928, rs20158479,
18:53289032-53289076	AMR	0.045	35647	upstream	2	rs538593928, rs20158479,
18:53289032-53368823	EAS	79.792	35647	upstream	76	rs538593928, rs201584798, rs117145248, rs8090341, rs644279, rs12457157, rs111769435, rs12103984, rs6566169, rs7236100, rs35691742, rs8096777, rs34733940, rs12458015, rs59006454, rs1421024, rs1421025, rs9946669, rs544586945, rs17089911, rs663118, rs11151206, rs11334798, rs619442, rs605951, rs56142542, rs58819658, rs79877068, rs652447, rs67543030, rs34986421, rs12964264, rs12458731, rs607664, rs528878628, rs899103, rs676735, rs4800992, rs590949, rs796742, rs796741, rs784231, rs784229, rs547533386, rs79284429, rs784228, rs784227, rs535225413, rs804200, rs631957, rs675637, rs687902, rs7245175, rs591693, rs639590, rs635474, rs149389759, rs2111564, rs668439, rs1031831, rs78309099, rs11151224, rs75802037, rs5825145, rs573380543, rs784217, rs34183318, rs62091211, rs784216, rs12457071, rs565165248, rs33950862, rs75561599, rs9946839, rs2901982, rs1245660,
18:53289032-53289076	EUR	0.045	35647	upstream	2	rs538593928, rs20158479,
18:53289032-53289076	SAS	0.045	35647	upstream	2	rs538593928, rs20158479,
18:53289092-53289421	AFR	0.33	35707	upstream	3	rs142117874, rs200115534, rs1054777,
18:53292430-53303546	all_pop	11.117	39045	upstream	9	rs17514601, rs8090341, rs644279, rs12457157, rs111769435, rs12103984, rs6566169, rs7236100, rs3569174,
18:53292430-53296927	AMR	4.498	39045	upstream	4	rs17514601, rs8090341, rs644279, rs1245715,
18:53292430-53303684	EUR	11.255	39045	upstream	12	rs17514601, rs8090341, rs644279, rs12457157, rs111769435, rs144286631, rs12103984, rs6566169, rs7236100, rs35691742, rs8096777, rs3473394,
18:53292430-53325378	SAS	32.949	39045	upstream	34	rs17514601, rs8090341, rs644279, rs113811429, rs12457157, rs111769435, rs12103984, rs6566169, rs7236100, rs35691742, rs8096777, rs34733940, rs59109377, rs12458015, rs59006454, rs1421024, rs1421025, rs660010, rs9946669, rs544586945, rs652749, rs79526326, rs17089911, rs663118, rs11151206, rs11334798, rs619442, rs605951, rs651350, rs652714, rs56142542, rs652447, rs67543030, rs3498642,
18:53292908-53294569	AFR	1.662	39523	upstream	2	rs8090341, rs64427,
18:53297223-53298282	AFR	1.06	43838	upstream	2	rs12104073, rs11176943,
18:53299460-53303546	AFR	4.087	46075	upstream	7	rs12103984, rs79794046, rs6566169, rs17089907, rs7236100, rs9955956, rs3569174,
18:53299460-53326656	AMR	27.197	46075	upstream	28	rs12103984, rs6566169, rs7236100, rs35691742, rs8096777, rs34733940, rs59109377, rs12458015, rs59006454, rs1421024, rs1421025, rs660010, rs9946669, rs544586945, rs17089911, rs663118, rs11151206, rs11334798, rs619442, rs605951, rs56142542, rs652447, rs67543030, rs34986421, rs12964264, rs77531971, rs12458731, rs60766,

No population frequency data found

No Alu found near the repeat